Scaffold DelMOSpr2010_c10043445

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10043445
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2011
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Elizabethkingia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012450	Metagenome	280	N
F022189	Metagenome	215	N
F068775	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_100434451	F022189	N/A	RLYAPVNDIIRSMEGYGFFVKTRLKFGDGFEGRWIARINGGDIIWLKVDRFMNVTETTMQGEPIENGRTGKMLIYTENRYKVQNLFNDVIDFRNYWNKELDSDFFVIESEGNKVIMRKID
DelMOSpr2010_100434452	F012450	N/A	MKAIIDKLPNFDTLIKSSGFAVFVMFAMMSAMAYTLWNQYNNMNERLTKLEREVIECYRDNMVHNQGIIERNTKVMEEVLNNLNIK*
DelMOSpr2010_100434453	F068775	N/A	MDKQELKSLVTAFGELITAAAKLDSDKDGKIEXTEIXSFVQTXVMKVAAVYGSFPEAMKQFKDVKSAERKELIAAFADSFNLENNDAEEVIEEWLFVIDDIADAVVITKKYFNI*