Scaffold DelMOSpr2010_c10038041

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10038041
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2192
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032641	Metagenome / Metatranscriptome	179	N
F042805	Metagenome / Metatranscriptome	157	N
F046347	Metagenome / Metatranscriptome	151	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_100380412	F042805	AGG	MKVTFPGWLGWVEEMPEDEDKEEKVSIIEKCFMEITDVYAEKLLWPSIYMDEENGYDPEDNLERIWYYSDAQSYLEEYLEENGYNRDYYHIMHVEATFHEPGEEPREVKFYVKEITCEIEHPGGNCSYEMFKWWVCEELYGDFDEYGLDVPEENYRIFLYCLNKAWQDVKALPECITKLIDKKRSTIKDDSLRVADEDGRTG*
DelMOSpr2010_100380413	F046347	GAGG	MILYEWQTKMGELVEIYEEMGDHTRANTFSEAVQQIVNHAEQFDISIKTTKDIDKFKGLEGVGRSTLELFKEFVTTGEMKRLKDLKGED*
DelMOSpr2010_100380415	F032641	N/A	MNAVSNNHSCMAGLANLGVATAFGAIMVSMEQTCGAFIIEGQRQRIDITKALKEGTEVPELEIDDNQMALLQAGRSFALVCLFGIFFMVTASPLVSKKRIFPMRSFTFLLAFLSFLAFSLQIYLIRSIKKGITRGDRTMRISLAVIYMVFMTVSLFVMFNY*