Scaffold DelMOSpr2010_c10037427

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10037427
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2213
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031466	Metagenome / Metatranscriptome	182	Y
F032961	Metagenome / Metatranscriptome	178	N
F034111	Metagenome / Metatranscriptome	175	N
F035678	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1003742710	F031466	N/A	MIVLTLGLLMLCVGAIIVAGYIHGDMHFAKVLEHL
DelMOSpr2010_100374275	F032961	AGGA	MSLTEKDKIYKYVWQCAYQRRYFAMCKGDWDLYNREHETILMCLNIAKWTEFDTEKPKYFTKYQE*
DelMOSpr2010_100374276	F034111	N/A	MLELTLASLLNTMSADFCALMETEKDVVKATFLAYSMANKQYGPDNVIKIINDASPIEIKSLAVSSVITKCPNKL*
DelMOSpr2010_100374279	F035678	GGAG	MGEDRKYSRYRVDQLAKELGGXWHHQIVTDGRSEHKRIVIEYDHKKTT*