Scaffold DelMOSpr2010_c10035437

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10035437
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2295
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002594	Metagenome / Metatranscriptome	545	Y
F019311	Metagenome	230	Y
F027183	Metagenome / Metatranscriptome	195	N
F066824	Metagenome / Metatranscriptome	126	N
F084306	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_100354372	F027183	AGGA	MPNCRECWDDGYLWTHPSGSDDDKPRFEKCDACDILKDDNEAHAKAQSRKYFIVWWNGFNVNIINGDNKPVTAEFTHENISENNGWHEEDIDEISNLTVGEKCNIDGPIERVTVFRWK*
DelMOSpr2010_100354374	F019311	AGG	MNHTFKHPSKYKKEVKETKYVPIRKCKVGKKYRFEEHEHTVVDYEYNYSYMTGTCVTNKTGPNIIFGKKEQLIEIKLHYPRPELQGEFENKLMFYFPHDDALYDDVKVVEYK*
DelMOSpr2010_100354376	F066824	N/A	MLVHFKFYRAGYFAEGLVESENLNTAGEALWKEHPKTFKWEDIQGPENENRLTLEEWNERGSTRQVESEAKPRSPVG*
DelMOSpr2010_100354377	F084306	GGAGG	MSEALLDKLSQKRNLEAQWASEFIANGSVTVKMVEIRKKIDQLAQELKEDSEIKA*
DelMOSpr2010_100354378	F002594	N/A	MAKIPTSRLNTAPEDYEKIDFDQLIEDLQDMIKILNTTYPKDIIDEEDKKQWFLMR*