Scaffold DelMOSpr2010_c10032159

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10032159
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2442
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010473	Metagenome / Metatranscriptome	303	Y
F013081	Metagenome / Metatranscriptome	274	N
F019630	Metagenome / Metatranscriptome	228	N
F030048	Metagenome / Metatranscriptome	186	N
F095051	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1003215910	F013081	AGGA	MDLIKIVKTIEPEYKNTNQFINPLPNEVELQLDSEDYLIEVSLKEGVLETNFWQGEEEYNASDDEINFIYNYLEQLLLNKIEETKEYYNQNSYNYQIWN*
DelMOSpr2010_100321592	F030048	AGAAG	MLPEELCKNKEIVAYRSCVDSYFSNGDRKDIMEYWLQLFEQKRFCEAKGVEKALELIDIYEDLNAKD*
DelMOSpr2010_100321593	F019630	GAGG	MPKIKKKIVLKNCNYEHQQYCFKKGFIIYPVVSGNMFKVYCNRIKDNYYMKGKEFNKQESFQAIWDLYTKIYNYEFNKIRG*
DelMOSpr2010_100321594	F010473	N/A	MNLIRYEVKAGFFKGFLFGVRHYPFDDEEIYEEDIVIYIGIFQIIITLIYEK*
DelMOSpr2010_100321596	F095051	N/A	MNTFTITFKNGLGEFKTEEITLDFVTVRAAIDWFEETFGLRVKSMSKH*