Scaffold DelMOSpr2010_c10031614

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10031614
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2468
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018534	Metagenome / Metatranscriptome	234	Y
F020115	Metagenome / Metatranscriptome	226	Y
F025729	Metagenome / Metatranscriptome	200	Y
F048249	Metagenome	148	N
F084107	Metagenome	112	Y
F092884	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1003161410	F048249	N/A	MNTSIFNTRIIRKGSKVLYRGSWGRDGQRIAEVIAIEQTQGPNEKYGDEVDAVGLDEHYVLTLNNGHWCYSYQVDGLVQPTENQSVTK*
DelMOSpr2010_100316143	F084107	N/A	MITEDLNLQDLTLEISSAFSDTGAYWKLIDVLSNQNKILNRDEIEELVDRLEAFITQEVQEIIDER*
DelMOSpr2010_100316144	F092884	N/A	MTKKELIDLMAGYPDDASVVIEVHDTSLHEDLYDFTFDAISWNRFDNTTSNPMDAFDYKEMHELRLTAINHNEK*
DelMOSpr2010_100316145	F020115	N/A	MMNNTMTYEQFELLRQWADRVANTANDTDTNIRSIDLVHDIAGILANDEHFLPRL*
DelMOSpr2010_100316147	F025729	N/A	MNDEIIARLEFFEETYAGEIETWIDPVTNTYYHVPIEIVRDFDNIEELFKE*
DelMOSpr2010_100316149	F018534	N/A	MALPTLTDFLNSWDDKLIVTGMTPERHDSVMTTTTNNIPVAIEYRHQISGSSGECSTIAYLVAYDENGNRVTLRNQTYGCFGDEEKQFHQWFAKKMAGAVQMDGQRRMNLSRTIDDWLAE