Basic Information | |
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Taxon OID | 3300000116 Open in IMG/M |
Scaffold ID | DelMOSpr2010_c10028898 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2613 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast |
Source Dataset Sampling Location | ||||||||
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Location Name | Microbial Observatory off the coast of Delaware, USA | |||||||
Coordinates | Lat. (o) | 38.848917 | Long. (o) | -75.1076 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F040181 | Metagenome | 162 | N |
Protein ID | Family | RBS | Sequence |
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DelMOSpr2010_100288983 | F040181 | AGGAG | MGFDWMGNDGDIYRSLKGIANKGGYFGSVNQANFWMRCAQESGVHAGPCFSWGDSVELEPGEFFFFCEGSISANYATQAGVQRGWGRKTRYKTWGFVVDAAGVSLIYQLYRSYNDKDGSSGPNAARTEVIWRRDNEAVEATVAGFEAIRAEREAKIAEAKAQSKYVGEIGERIDIEGVARLVSSRPGRWGTTNLYIIKTLDGNTLKYSGTNHYGEKVKITGRFTVKQHTEYNGELQTVINRPHKVESEVLDDTND* |
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