Scaffold DelMOSpr2010_c10025290

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10025290
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2833
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → Phycisphaeraceae → Phycisphaera → unclassified Phycisphaera → Phycisphaera sp. TMED151 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005751	Metagenome / Metatranscriptome	391	Y
F035833	Metagenome	171	Y
F065673	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_100252905	F005751	AGG	MSDIYTIDFDPSKLSYQQEELGMRFADLDTACELMKKEEKMIIAELTVYYSRKGGYKNMTELNGLIYSDSKFKDYFDRYERTLKERNRSKIRFESFKAFRDDLRTKVVNERELAKHL*
DelMOSpr2010_100252907	F065673	GGAG	MSDKILSEEELEIETYKSDYIKEHIIAKHMSDIQVMSKLISSINEYIIRFGRTSNVHDQLIDLKAQVKKNRDHLNDWVNKI*
DelMOSpr2010_100252909	F035833	N/A	MQISTSHAMQQAIYNRATNARQMLWYLKTPTKTKPAEFTQLELATYDHHLNICKHIVKVMGNFLKNVNSKDDVKMALIPNPDNWIWKEETVLNARKEVWGF*