Scaffold DelMOSpr2010_c10023434

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10023434
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2974
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001165	Metagenome / Metatranscriptome	760	Y
F007026	Metagenome	359	Y
F019817	Metagenome	227	Y
F020342	Metagenome / Metatranscriptome	224	Y
F029405	Metagenome / Metatranscriptome	188	Y
F059883	Metagenome	133	N
F074820	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_100234341	F059883	N/A	LIINVDEKYAIVNALAFYHAHHMQGALMDNDEREQYLLAFQEDGPAKVDALATRVANTF*
DelMOSpr2010_1002343410	F074820	GAGG	MTVLAIEDTSFTDTHVTVTAVVDEMRLLYRATHFEPEE
DelMOSpr2010_100234342	F029405	N/A	MRDPNFIDEQRNADFLDAMSDIAYEQEEAMRESNQSDWDGIEDISSAERNACDHYNERYVIND*
DelMOSpr2010_100234344	F019817	N/A	MPAIAPVALTINQRNLYAYFLNHKKKYGNTACFVPRVPSQNSRLEQYLQALTKLEEYGLIRVDRSSANYTGWIMTEPKQG*
DelMOSpr2010_100234345	F007026	N/A	MAYPEINWKKNEYHQLQEVVNLLKAIQERESKRHQMDEHLTPHTADVVLEVIGMLEDEIDYDPTPNDPGEPPITLDEMHTAAWREHQEMHR*
DelMOSpr2010_100234347	F001165	N/A	MTSNTPRIPDSLDMQRLQAMQLVAKMKESADKHGVGFIGGFVAPNGEKFVMSNMDEDETQALLPDNLK*
DelMOSpr2010_100234348	F001120	N/A	MTKDKSPLNFDKTIAGFNVTERGIQSYTKSFQLGPFQLTLNARESGVRGSISIPGTGLSKRNIKLF*
DelMOSpr2010_100234349	F020342	N/A	MSAVTDNINLFDRINLAACARRRASDNVLNSTRFEGEYDTARLWMKYRLIKTTNYSYIEDN*