Scaffold DelMOSpr2010_c10020286

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10020286
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3250
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006684	Metagenome	367	Y
F044196	Metagenome	155	N
F054046	Metagenome	140	Y
F080621	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1002028610	F080621	N/A	MENINETIATLSIDIACLLDEPSEVTKDDLLKIQDLVTKLENDTNTP*
DelMOSpr2010_1002028611	F006684	N/A	MYKIIISYIIASALALGLLNHAVNKAQDNIETLAEVLVHHSDTLEDHRGVLLQMIDDLTIKPM*
DelMOSpr2010_1002028612	F044196	N/A	MEDITDKLENAKILINQMIGSHQGTPEAATQYAIYQLGLPQDVASSLIQYANQVNKQ*
DelMOSpr2010_100202864	F054046	N/A	MKIEVTKEAAWQLIGNDEKTWRDFTQTELAETTLYHGHGVNIQVIHNYIGGITQYYIEDINA*