Scaffold DelMOSpr2010_c10020247

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10020247
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3254
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008128	Metagenome / Metatranscriptome	338	Y
F041147	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_100202473	F008128	N/A	LIDIAFTATVIAPLQQGMEPVYKTKLTVSFAIDLEVEYNSFGGKTVDEIAEALQDDLDDLLFELPHVEGVYTTLTNLGFND*
DelMOSpr2010_100202475	F041147	N/A	MDITNEPIDAISKWQEWYRKHRIVAEMDEPLVTKDSRENMHDTSKATTTLDGSDNLLTDYCKAMSFQRAKEYFADTIAEFTNELSGKELYKAFYAAAMDNMDAVEKEYNKAKQLVDMLRCNNVAP*