Scaffold DelMOSpr2010_c10018857

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10018857
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3397
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059774	Metagenome / Metatranscriptome	133	N
F085396	Metagenome / Metatranscriptome	111	Y
F098941	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1001885711	F059774	GGAGG	MXYEXFDNDPMLDYERPERLNRQLSLQQLESRLELWKKKHDDMCLKLYRAATGI*
DelMOSpr2010_1001885712	F098941	N/A	MRARACMSFRFKKMTAKFYHWGEKLSAFSEGRLVMSFGSPIASVPITVKELQDFVCTLEQAIDDEPNIKQRIALGSIKHIFQASLKQAQRDHETILREAPTGADLEEYMMNYAXAIKXGGL*
DelMOSpr2010_100188576	F085396	N/A	MVLLMTQTPFLTRSQRAIARMVQDASGYALSCYSQDDRLAARNKLLAIVPTAPDYAPSNKPAKRTKAFFVTLADSMEDNVWRYL*