Scaffold DelMOSpr2010_c10017215

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10017215
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3586
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012718	Metagenome	278	Y
F013946	Metagenome	267	Y
F034713	Metagenome	174	Y
F059991	Metagenome / Metatranscriptome	133	N
F074141	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_100172152	F012718	N/A	MSNLLQFDLSDIPDNPSIVLSGRRRAGKGVLCKDLCYNFFRGKVKNSFLFSPTAEIANNGFDFIPFEFRYSEVDVETIERIMKRQEYLIRNDPKGDFRTLIIIDDIIATNDNKQQKILDKLFICARHYQISLIVCYQYIKKDFTPVQRDNVDLIFCFQQSNFDNKDALNRQYLSVNDNKKDGMDLINKYAVGYQTLTIMNTTNSDKYEDFCYYYEADLINKKFKLGKDYE*
DelMOSpr2010_100172153	F013946	N/A	MDSQSIIDSMLRGVMIAGVNRAVFERKPVFSMGTINQGVRLGVASVGYDVVVRPAVKQVLPQLPLPNGR*
DelMOSpr2010_100172154	F074141	N/A	MTEECSDFKDVHYANKHKKLCAYCSYRLAIPSKNHQYCSEICRLLHLSITKKLNIEDIANLIKLSKVDLIHIILTLKCQDISLEGVHKILNKPYDYKQKILKKEDKKVLINFD*
DelMOSpr2010_100172156	F034713	N/A	MVLLTFSFTGENTTGAATFTIAQEYKFKNLYIEDIKYNIFNQQLENTISSGTTNAGIASVSTLITSPLGIHMDFLDTKDAVLYSLGDGSGETLNTAQNISGLIPIGYAGKVGSQPVSTRNTMSHSYPYKVISNRPQTWAXGKSLVFNLYYRDVLTDGIIKDWALMSGTTDAFSDINSISITLRLE*
DelMOSpr2010_100172157	F059991	N/A	DDLYLQTEFARGDTNADTGAKDCFLVDMAGAFTFSKIRVVYNGNTVFETTPEHLVVSLYGRANREQSLVLDGMLGSAIVGAANDTHTNLEGRMAMASSFGGQKLSCPLKCWFSESVGRNFDLYSLSSKCFLEVDYRPILDVHGKAETAADRITYAGSNLICYLNELSPQEISAYQSRNYAPNSVSSQLGYTTTQLVESVATPVLVTATTAGNKIKINSISGLCRRLYVFATLDADRASTTAKKYMNLVDLGSIKISANNQVIYEIQDCGVGIDNLNRTAGNGYQTDQFVEMFHNKLSGPANGAVASDTYKLTDIGVDKSIGKTSGDEFEFSRVKVINFGMNPDDYSSADGALALSQVNVPELEVKFPTGTSGAHSVHVVAELITLSTYNTSATGQINFKSISE*