Scaffold DelMOSpr2010_c10016942

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10016942
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3622
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002430	Metagenome / Metatranscriptome	560	Y
F003073	Metagenome / Metatranscriptome	509	Y
F016757	Metagenome / Metatranscriptome	245	Y
F056143	Metagenome	138	N
F100955	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_100169424	F056143	GAG	MGKMSDWAIQLEDDFWDTANKVIGGCEYFGQFVQEMQPHRDWLGTHDDQEYCERLRDAWDNYWSKYNVNE*
DelMOSpr2010_100169425	F100955	AGGAG	VIKKYTEEQIANAVTNCVESWDREKLIGYASLRLYVEFMDRSRPVGDIDDLITEFGDG*
DelMOSpr2010_100169426	F002430	AGGAG	MMTLNLPKKQVNAILVALDAEIEMQLGGRPVDWESFPEVAAMLMAYYTTRCEFEENCGD*
DelMOSpr2010_100169427	F016757	AGGAG	MTERTWEVKVEATTTREVIVHADTEYEAQIQAQIEMVGLVGGENTKVLAVKETTDDDA*
DelMOSpr2010_100169429	F003073	AGGAG	MAKKLQNMTQDERIAHWENVREKERINRRNRIAKLTMEQRAAVININKLLDTVLDVALYPDMGGIKAVTAYDLQELSDAMDALQYQFNLRGE*