Scaffold DelMOSpr2010_c10016938

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10016938
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3622
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033013	Metagenome / Metatranscriptome	178	Y
F035748	Metagenome	171	N
F059943	Metagenome	133	N
F103222	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_100169382	F035748	N/A	MKLYAPEYAGMTVWAVADPKSGKGAYTATKGNTPPPNASYGHPIGRYDSDGTYWTFCPNAGEEDPNSPRSSRYAKHPHGADEQRAAIKAKAWGNLSSMGSYKETEF*
DelMOSpr2010_100169384	F033013	N/A	MAIQLTAKASSTKTVMLQLDQDLYARIKSAAKEHNLPASAAIRQILEQGIIEIEANVG*
DelMOSpr2010_100169388	F103222	N/A	MDREKLVAAMRQEVQQIIALQTMLKNVAKAEEQGYQTTDQRRLDAICDLFAGGNESLMTAYYKVKDEQGR*
DelMOSpr2010_100169389	F059943	AGG	MNKVANFAELFPDWQEPNRGPGVSYCVAPNARMFDYELLLPGERSLRGCIRAIDKQDAIRILSNRHPNCSIVEVGKGRRIAPKSKKA*