Scaffold DelMOSpr2010

Basic Information
Taxon OID	3300000116 Open in IMG/M
Scaffold ID	DelMOSpr2010_c10016792 Open in IMG/M
Source Dataset Name	Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300000116 Open in IMG/M

Scaffold ID

DelMOSpr2010_c10016792 Open in IMG/M

Source Dataset Name

Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	3642
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (45.45%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3642

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (45.45%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location Name	Microbial Observatory off the coast of Delaware, USA
Coordinates	Lat. (^o)	38.848917	Long. (^o)	-75.1076	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Microbial Observatory off the coast of Delaware, USA

Coordinates

Lat. (^o)

38.848917

Long. (^o)

-75.1076

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002495	Metagenome / Metatranscriptome	554	Y
F003365	Metagenome / Metatranscriptome	491	Y
F005537	Metagenome / Metatranscriptome	397	Y
F008307	Metagenome / Metatranscriptome	335	Y
F019967	Metagenome	226	N
F043149	Metagenome / Metatranscriptome	157	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1001679210	F008307	AGCAG	MVKVVKKSDIEIAAEFEEIFDGATVEEATEKAHNQKMPSESAKFIITDTRFTKANIKLIGGGENDGTK*
DelMOSpr2010_1001679211	F043149	GGAG	MALSNSNVRLYAKLDKAHKKIMGAKDGKGRQCVHTLQNFKEYNQLFRRIVEAENKDSIFLYT*
DelMOSpr2010_100167923	F019967	N/A	MIKVELKPIDVELALDTANKRFIGNLKMNKGFSYGYNKGLKGQLTDGFLGALGEVAYAKAMNNFYNGSYTDHLERYNDSDFQNNIEIRTQEKRNYNFLLIRPGEKKGKYILIIKDNDKDFNFSIMGWFPFVDDMPERLTNFGHYDRPAAYKIDIKELYNMNDL*
DelMOSpr2010_100167924	F003365	N/A	MKTIGKEWTKKEEGGMFTADHLSPSQLNKNVDQWFNDYCVLTAEQRKALVGNLKMDFGGFVGQALQDIIVYNLTIDEVMEGKK*
DelMOSpr2010_100167927	F002495	GGAGG	MSTNNGSGKQKDFVLFPYDANNEKAIKIDFSGNVTLDNGNKGTILGSKAASKDGKTKFVRVFAQIGVLFKGDDKFTGEMNYPDAGGQKGLIGWLNDEGTILSGYKNEPRPKQGKAQSKEIPF*
DelMOSpr2010_100167928	F005537	N/A	MSLLTFAKINKEIMSDNVKFISELERLLNEKQSDYGHFDNTSFVMAGIMEKYLSVYNNKDIKVPLKFFGIFMVFLKLWRVMQSDSYKKDSFDDINGYAELLRRLVINDENSKR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold DelMOSpr2010_c10016792

Overview

Ecosystem & Geography

Associated Families

Sequences