NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DelMOSpr2010_c10011862

Scaffold DelMOSpr2010_c10011862


Overview

Basic Information
Taxon OID3300000116 Open in IMG/M
Scaffold IDDelMOSpr2010_c10011862 Open in IMG/M
Source Dataset NameMarine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4482
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location NameMicrobial Observatory off the coast of Delaware, USA
CoordinatesLat. (o)38.848917Long. (o)-75.1076Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021101Metagenome / Metatranscriptome220N
F039605Metagenome / Metatranscriptome163N
F077245Metagenome / Metatranscriptome117N
F105097Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
DelMOSpr2010_100118622F077245N/AMLCENSLITHIEIDMKTSLATLKVVCPHCGRKNYHVVHNAAKRDETGIHIHFEYEKMSERYCAARKCGKFYELF*
DelMOSpr2010_100118626F021101AGTAGMWFVPAFIGIHSFFERRFSPKKTHVIVNLFHMASVFTWNPGFVVSKSYFLADFFLLFNNRETYPGMWQILLAHHVVSYAILASEKDNEDVDLALKWAEVSNMSLAAYELYPNIFTKTMRVIIYPWSRCAMLPLCLIECTKSLGVKAVVLGVPIVGGSFWWSWKIIKDFLRR*
DelMOSpr2010_100118627F105097N/AMFRAIGIAVGMWGASTALTYAHYRFCFPWFTIAEPCLSVQRSSVFLNTTIQNYGYMAVGLVVDAALKMMPPVMRKTIKEKTPKVE*
DelMOSpr2010_100118629F039605AGGAMSAMSALYENEAMSGFVNNIAESPFVQKSRMSPKNALVILAFFLMILSSIGTTYTIAQIKPTPTQRDALDVLKAAQMKFYNSREGRKTIASVAKNVGIKNLASQKEYMNLAINSNKMVNRIIMRSKIFTISTVRQALDLFGTLGADTQKTVANASGTISGLSGVMFNVVKVAETIAEKDLGPIARIALWGSSLTVGASMLYGLNPVQMAAIAKGVTGLIAKMYRDRKSYYDMVVTVYKYVDKGVRKMKRSRTVTSN*
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