Scaffold DelMOSpr2010_c10011359

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10011359
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4603
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001190	Metagenome / Metatranscriptome	753	Y
F003889	Metagenome	463	Y
F020527	Metagenome / Metatranscriptome	223	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1001135910	F001190	N/A	MTSSVPTGQPTAEXYFDINKFEELLSRLESSKGRQQRQKSLEGRRDIFAGGLASMMSNF*
DelMOSpr2010_1001135911	F020527	N/A	GQRRDYAAKYDLGPKEGAVADLTKMYTEELLPGRRTTGISAAYEELLGRQATEEEKTKSLERFQQGYYSSVQDLKDSLVKSEEYQDKFNQSYLDNYYDTMFGKQSVDEAGKRTGQRSFTFDKSLLPTYKGTDLEGRAQIKTPEFADKFTGTPAEIESQLQNVRDTRQYLYSAGLTNLQGEIDKETQKLKNEGAKELQKVKAQGDIYQSLVGSFSF*
DelMOSpr2010_100113594	F003889	N/A	VGPEYVAIALTACISALTGGSWVANRIMDRQKERMEQAFSYISSQKRRIDCLEDDLKQLPIEYVLKVDFLREIQEMHENFRQINTKLDKLMEKLLSK*