Scaffold DelMOSpr2010_c10010605

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10010605
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4793
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007139	Metagenome / Metatranscriptome	357	Y
F021865	Metagenome / Metatranscriptome	217	Y
F034347	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_100106057	F034347	AGGAGG	MSNPNNNQNFNDEALRINRALKKENDALSAIVDEFEDFLLNYDVEEFHEEVITKIQDMILKVRSRDAM*
DelMOSpr2010_100106058	F021865	AGGAG	MRCKCCDNVLNESESKARESKDKAKFIDLCNVCRYYSNPYTWLSDEEIIKKEDIIVDSD*
DelMOSpr2010_100106059	F007139	AGGA	MITEGIAKYVYLDSTEKFNGEDTEKYTLTVALDDKNAKALEKEGVKVRTIKTEDGGSYKARKFSTRYKLDFDMIKTDDGEAIGTDFGPESKVSVLWKAGQIHPTHGLATYLTAIKVTDRTEGYKSADDETNEFFN*