Scaffold DelMOSpr2010_c10010561

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10010561
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4803
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030556	Metagenome / Metatranscriptome	185	Y
F031255	Metagenome / Metatranscriptome	183	N
F035552	Metagenome	172	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1001056111	F030556	N/A	MANDKVFVGKTNVVNTKYGEIVKVAFGPQDFEVLMNAKNEKGWVNLEMKDKRDGGKYFQLQGEYTGKPKAAAVNDTDDMPF*
DelMOSpr2010_100105612	F031255	N/A	MIKYFNEVVTDLKQKGTIFGAEYRKKNGEVTKINGRFGVAKFVKGTGSSNPNVLTVWDNNRKRYTSLIPDNIVSVTTSGTKYVKSDEFLVVSYE*
DelMOSpr2010_100105615	F035552	GGAG	MKIEDELLIQADLKVLYWVLGEVAEKAKEDNDFIKVLLQLEQFVEIHKTRTNDMVTYRDTIEKARNEYRSLRLKYDGTKELLGTTKTMLDKVMNDKLEENVDN*