Scaffold DelMOSpr2010_c10009342

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10009342
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5161
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Inquilinus → Inquilinus limosus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016061	Metagenome	250	Y
F035125	Metagenome / Metatranscriptome	173	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1000934212	F035125	AGGAG	MEKTKKKITVRFVVEQDFEIEVRDSDLGMGSFYAIGDVMVSSGFDQWDLLTHENVFDNPVGELRPVHNDHWFDVNLYNLGLHSEYIQPWLFEGQKDKDPYEEEEENDNVVT*
DelMOSpr2010_100093425	F016061	AGGAG	MSYIKVKVTNILNAIAGAKPTIDRRNYATYNRMGKYYVGPSANGKFLQVNDGLHIRYYGNPFWNLYRVVSKNGNDFVIHQAK*