Scaffold DelMOSpr2010_c10008876

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10008876
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5318
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023607	Metagenome / Metatranscriptome	209	Y
F042278	Metagenome / Metatranscriptome	158	N
F062182	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_100088763	F042278	N/A	MKVNQSLWEALKNTIEMHTEQDHNITDVLINYQVKENTGVKNIIKLNVTLE*
DelMOSpr2010_100088767	F062182	GAG	MALLHINSMVIKEQMIPRAMTQKEIISEIREEQKTMAAMQYRLAADLSTFFNKQELFNQRISDILDNDEKTDKKGLVYEVGELSTRIDKIELKEKVTAGKIAVTVTILTFIGGVVLKAINIFD*
DelMOSpr2010_100088768	F023607	N/A	MHIYKLVFDTEQQGKQVLXDNNVWEEXTIEGVTXMQYINGTKGVVNIGKVINPQATTDPEHPIYYPGYAYDVMSTDELELEQYRVYPNGSAAHQFYGYKRADDT*