Scaffold DelMOSpr2010_c10007025

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10007025
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6087
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015734	Metagenome / Metatranscriptome	252	Y
F019756	Metagenome / Metatranscriptome	228	Y
F050011	Metagenome	146	N
F074154	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_100070254	F050011	N/A	MNVSLENFSDHLKPYLLQDVAICTDRKIIRKGKLRIFQIKQHYAKLTLEDEIRTRIYEIPYPFEITTMGSKTILCYKLSKLLNFGDLDLQVKFLDSSKKSKIYNENLYIMPLHEVDL*
DelMOSpr2010_100070255	F015734	N/A	MIIQRVALDSLLLKNVCEVRFVRRRPGAGDGPTRRMLCTKSYELLTSVNGRVTLNYAPPKGPKKINEAAENVLVVWDILMQDYRTISMNSCDLIQQIPDKEFWEYFNENIYPMSPEQKFNFMNS*
DelMOSpr2010_100070256	F019756	N/A	MAQRSIDTLAPQKHLIDLTPNSEGDVGLSDDYELSMIFDDILLVEYVDDNETGEIQRNGIFVPTNALTKAWRRAKVILAGPNAEYTKPGDIVIFPNNLGVTVANIDVNGSTIKRGIFLNEDRLFGICKVKDDNTKSSS*
DelMOSpr2010_100070257	F074154	N/A	MNFFQLQNKLFYSNKSKQPEPLDSEGEQAFVPFLFNRWLTMYSKDTVGFVNETLNKYCGIFDTDKQKTYQMYYNLIPRLKFKRISYIKKVKKDKDKQDETDQLKMIAKNKNMSVRELEIYQNMLD*