Scaffold DelMOSpr2010_c10006590

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10006590
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6315
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (52.63%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012834	Metagenome	277	Y
F027349	Metagenome	195	N
F043684	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1000659012	F012834	N/A	MNSERFTDTAWTTGNFNKATISPSQTALNNWTYFLKYQLIPHLKFKPEKPSISFKTGTFVHEWFQNILMGNAKIEDVEKHFKTHIEQFKFSEKHRMKSLFLLKNIKGYVQRHLDAIKEISTWGEGWGIEKPFSDWYDNKYLGQTLNIANEGYIDCYNDDLKIITEHKNRFGSAKLSPLKKEPKKNVKPNENRIGDWTYTKSQKIXKPQFTHCIQVAVYSKHYNYKYQPYLIYVGDSDYTIFTKDNCWELSNSGLQYFFEKFIQINIQRQEMLRIANGDIRKLAIMIGVDWSEIRNYKNNFLLENYHEEDMYKLETFYEQL*
DelMOSpr2010_1000659013	F043684	N/A	MTIESVELKWEEIFSGAFTGLLRQSESMRNNIKWGHGAKFSIYEEWGRSISGTICEMALSKKMQSYFSHSVNNYFGKDLIINNKPVQVRSQLHSKQNKSLIIRKPFNHEDYYFLVGDDTPKYYFYGYILARDVSSVGNWTNFNNDNRPYVWSVPFDKLKPIDQFQYEK*
DelMOSpr2010_1000659018	F027349	GAGG	MKVWNIRVTDRNGFDSYSFFQEDEPTNQQLEVIRKIYQNSGRYIPEDIEDIDVEIKGSFDNQNIPTYDQLIDNLKNKYEVKK*