Scaffold DelMOSpr2010_c10006472

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10006472
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6378
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (29.41%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015852	Metagenome / Metatranscriptome	251	Y
F034543	Metagenome	174	Y
F053137	Metagenome	141	N
F060835	Metagenome	132	N
F071094	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_100064721	F015852	N/A	NSEAKTITKVIEKPVPTIKYVDRWRTDTVRFVSKELVTRYDTIYSDKIVIRLDTMLLIDTLKIVETWLTEVANYDTTVNDIRLTWSNYQNRTENLKVQLRKKPLGWALGVHGLVGLQSDFVESYTPLFGVGLQATIKRTYISANYGFNGQHFIGVGVGRNIINR*
DelMOSpr2010_1000647212	F034543	N/A	MIQIPKISEVTAEANAKKITAYRIAKDTRLSTQTVYAYFKGERVSVRTQEAIINYINKY*
DelMOSpr2010_1000647216	F053137	N/A	MNEQHLKALKCMVFAQSFVEALDDFGGNRAFKHQLKNKGNAFAKEVDKFLNDTYSKGSTDTSIVNLIEGCQDAIDKLIEESVTVTE*
DelMOSpr2010_100064722	F060835	N/A	MTYHTNPITREEIDKLLQKNASNQANLGTESTDLERFETKIKWAELLREIRSLDAEFADIVQAQ*
DelMOSpr2010_100064724	F071094	GGA	MIIFLLTVSVCLLFFIVGLLLYIGYKVRQFEDTQDVIFDAAVSAEERNREIELNQEAILNAYSRQN*