 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300000116 Open in IMG/M |
| Scaffold ID | DelMOSpr2010_c10005823 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6770 |
| Total Scaffold Genes | 20 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (60.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium TMED228 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Microbial Observatory off the coast of Delaware, USA | |||||||
| Coordinates | Lat. (o) | 38.848917 | Long. (o) | -75.1076 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F048362 | Metagenome / Metatranscriptome | 148 | N |
| F062275 | Metagenome / Metatranscriptome | 131 | N |
| F074909 | Metagenome / Metatranscriptome | 119 | N |
| F076607 | Metagenome / Metatranscriptome | 118 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| DelMOSpr2010_1000582314 | F062275 | AGGA | MIAHTINLVGEFKDLPTNHEKWWEEYKKGEKFALSIKKKNALPLKEIYKKMYEDGIHYLQLHFEGGHDEGGFDGDFVFLDKDKNPMTIKDLSKYSPTGWIDEYTPLEYTIEKGKDKITQVFEYRNTNYSDVKVTQDWLINKWYEFGFLEEWGTFAFEGNVYGEVIVSTKDGSYNVDANETFESYESKDFEGKMFDD* |
| DelMOSpr2010_1000582318 | F076607 | AGGA | MSSFKQQILEDIEKLHFDYAECKIEMEEFIAGITRLGVDSPADIEEHRLNAEEARYEYKVSQHQNKF* |
| DelMOSpr2010_1000582320 | F048362 | AGGAG | MLNKLQNWLMNVAARWLWVAIMLPFRIILGLCYAVSKHMPDKVELPYKIVKKDSKQGWL* |
| DelMOSpr2010_100058238 | F074909 | GAGG | MTVNPNVDLNGLTNDPVVNKVIDIVVARHIEGMNKFGKTLADNERPINEWVDETIEELIDAIHYLVKAKDIFDKFKADNKKLKAALEAFEKGSFKDEENKTEATS* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |