Scaffold DelMOSpr2010_c10005575

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10005575
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6931
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (10.53%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006492	Metagenome / Metatranscriptome	372	Y
F015852	Metagenome / Metatranscriptome	251	Y
F060835	Metagenome	132	N
F072852	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_100055751	F072852	N/A	MTDSQKLLGGRGCKVLGVAAHTSLTGYAFIAQEDTVVTVFTVGSTDSLAAYGLSTPLKAGAYIVVPSGESITAITLTSGSVIVYNQ*
DelMOSpr2010_100055754	F006492	N/A	MEAILEALASYGIAGVFLAVLVYYLNKLTDIHRDERKDWQDANNKHVEKFADVINENTKALVEMKGELKENRCKM*
DelMOSpr2010_100055756	F015852	GAG	MGWNIAIHLIKAYTPYLLAFLLGVLIASKGCGEPETITTVIDRPVPTIEYVDRWRTDTVRFVSKELVTRYDTIYSDKIVIRLDTMLLIDTFKIVETWLTEVANYDTTVNDIRLTWQNYQNRTENLNVTIQEKSQPLSWALGVHGLVGLESDFVENYKPLFGAGLQATIKRTYFSVNYGYNTQHFIGVGVGRNLISK*
DelMOSpr2010_100055757	F060835	N/A	MIYDTNPITREAIDKLLAKNASNQANLGTESTDLERFETKIKWAELLREIRTLDAEFAEMVQPQ*