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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300000116 Open in IMG/M |
| Scaffold ID | DelMOSpr2010_c10004730 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7606 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (17.65%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin216 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Microbial Observatory off the coast of Delaware, USA | |||||||
| Coordinates | Lat. (o) | 38.848917 | Long. (o) | -75.1076 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003835 | Metagenome / Metatranscriptome | 466 | Y |
| F025148 | Metagenome / Metatranscriptome | 203 | N |
| F045652 | Metagenome / Metatranscriptome | 152 | N |
| F053650 | Metagenome / Metatranscriptome | 141 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| DelMOSpr2010_1000473015 | F003835 | N/A | MKIDLKVRNTIAQLIVDMEIGESKPIRKHEMVPVIKEVNDTALISHAIRFVKNADGEVIGIKKYRKTAIEKRFERDDQGMQ* |
| DelMOSpr2010_1000473016 | F045652 | N/A | LKETTKVCSKCKNERPILEFNKLIRGRGGRRAQCKHCDKRYSEQRGLNIPQEGGNYKLTNQTMMNHMYIHFGWWESKITAVERDQQRRDVRKYYKPEQKDKLK* |
| DelMOSpr2010_100047304 | F025148 | N/A | MANVDFAKGHGTILSGSVKYARLTNESGPDGMSEKYGCDLYLDDASTKQLTDLKVLDHVRAKDPQGNFKHEEPVVKIKSINVPKGYLANRQMFDGLIGDGSEIRANVWIKKWEHKGKKGLSVWLSAYVITNLVEYKTNDSDALFEGLPDVGELTPGFENVPTGKPNVASQADAFGDADGDDLPF* |
| DelMOSpr2010_100047306 | F053650 | N/A | MKKLIRKRRHMAYVRRYIIELQWDSLNTILVASKTQWNDDIVRALDNNARLIRKYERRRRWLVF* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |