Scaffold DelMOSpr2010_c10004534

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10004534
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 7779
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011403	Metagenome / Metatranscriptome	291	Y
F011589	Metagenome / Metatranscriptome	289	Y
F067803	Metagenome / Metatranscriptome	125	Y
F095513	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1000453413	F095513	N/A	EDNTYRVVQENELGYIPIRTVYNAQKVYNNVGSTIIQDVSQIQRSIYGDMAEIYSAITYGAHPTLVVDETTDQLNDGQVGAEPGSVIRVQAGLTGEPSYVYEFASPDLGAIDSIKGLVDSKIEKLSQIAMLRSEDLIKSSRSGEQIEVYDDKLAAQIRKKATNLENSEAKLWDIWFDWTNQTKPADFNVSYNRQFNKKALEHELSEINMSLNVLEKYDAMFTEGSAIRDYPTIEEAEAEARRLGGSGYHSHIREDGLETYMPFATHLEYELATGERTEADTEFKTEMRDKIRMRLSQLLSASTTNSGF*
DelMOSpr2010_100045347	F011403	AGGAG	MAIINVSAGSEAVLFLGDSEANANIAGSDGLSVPRMSDITLNNSTGVFRFKTLDNTAESAVTTPATNQITLNVVVDDAAFFGTGAAVDTVVGTGLFGCSKNKTRVYFNAGFEGTDSGSKFLSGSGFISGLAPTVNMDSPVWVTPVTIEVDGDFANSSIA*
DelMOSpr2010_100045348	F067803	GAG	MAIRDTLKANLDVALASSNVSVSSELPYNSGGEPLYFKNMKYLYLDEDNIEKTELFNNLDNNDVIQTETGVTGYLSVDAKNPPGDIDTIVSDIITSRLAVTGQPTRDCEMTTEIDADRLLYTFNFNFITFN*
DelMOSpr2010_100045349	F011589	GAG	MAFITVGDTVVSYAEALDVRDKDQRLFEGNEIDFTNVPDNPGSLNNYIEDLAIKSTNRINQKIRASARWREYLGYTGTGFDINSIPEFDPSNIVGRKADFTDMCCYYVLKEYLLPKIADFGNPESPEVQKIQYYDDKFNELFTELMNMFDWFDEDGDSVVEDGEKMVRFSLTRRTRGRRSTTRVR*