NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold DelMOSpr2010_c10004426

Scaffold DelMOSpr2010_c10004426


Overview

Basic Information
Taxon OID3300000116 Open in IMG/M
Scaffold IDDelMOSpr2010_c10004426 Open in IMG/M
Source Dataset NameMarine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)7884
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (26.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location
Location NameMicrobial Observatory off the coast of Delaware, USA
CoordinatesLat. (o)38.848917Long. (o)-75.1076Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025493Metagenome / Metatranscriptome201N
F027498Metagenome / Metatranscriptome194N
F039607Metagenome / Metatranscriptome163N
F041165Metagenome / Metatranscriptome160N
F078651Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
DelMOSpr2010_1000442612F039607N/AMDLTSEFSALQTNVDRKMKIYADQCIENAIKALLMDNPSLYKQDMYKTMAKYQCMYTCCHLDQREKKCSTPAVLRGYCEKHAMPTAYEQMTNNTRRTSLPNRVMPSFGS*
DelMOSpr2010_100044262F078651N/AMNVGQIVHLMEKKKGAIGRLTDSDEYVLRNLRLTPHDMTIDEHIYIFSSLPRYMDKFSQTMTRMAAWSWFTSEKKNKVIL*
DelMOSpr2010_100044263F041165N/AMNQALLHRELNGRFKRPHSCFKLALIHALETCEPVDFVRVFKLNRAPADEWIRRRAYPSLERFLDFHPDIEMLSPDWFTFMINATWIMTSLNWIESDEDGASLKLHHEL*
DelMOSpr2010_100044264F027498AGGAMPTKGDIKQVEGCTDYLEFNGKRWHRFHENGKDAGIGVWGETDEVGSPAPRWFLRPRARRFN*
DelMOSpr2010_100044268F025493GAGMVTTARYTQPEFRHAMETLDDEVFYAVYRWIMENEHNFEMMGVEMLGMTNSQSIGIATEVIEALLKFSQHTCQEEIKDYTASLVCFTDSAVYALLVNVDKERFGARRFAKFIYTTLMNALKRDLLENLYVLI*
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