Scaffold DelMOSpr2010_c10003853

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10003853
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 8449
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (89.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024320	Metagenome / Metatranscriptome	206	Y
F030067	Metagenome / Metatranscriptome	186	N
F030293	Metagenome / Metatranscriptome	186	N
F103165	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1000385313	F024320	AGGA	MTIDEYATDSGVLDDNLGPTVDPETHAMVEHLVEFDTEMYRLDSRRKYKGLSYKHLERLMIELHGEYWRDAL*
DelMOSpr2010_1000385315	F030067	GGAGG	MPRESWEIAHDEYYDDLEADDYVGLDDISAWKEEEQKIIDELCKRMEKAYSD*
DelMOSpr2010_1000385317	F030293	AGGAG	MIVEMLDDRVSIEALGLIPHFFERSLYIEGQSIQSVADKMDSLYHYGGFVYPFDGTIVDNKGRYLADNDEDGPLDPIAKITKLGFTLWVYPYSIVGLTDTKGNQKIARFD*
DelMOSpr2010_1000385318	F103165	AGGA	MITFYMCQITGKYFEDTLIAKTAERVMDYPDEPSWGLYKTFDGLAVLVDSDVREAKETVDNDS*