Scaffold DelMOSpr2010_c10003224

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10003224
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 9347
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (35.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020001	Metagenome / Metatranscriptome	226	Y
F025981	Metagenome	199	Y
F034542	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1000322414	F020001	N/A	MSDGKTLLTIAETAELLNCSSGFVRKRIALSEASQPGGWPTTVYVNLQPNGAKSLYRIKKDALEEYLQGTSAAKVETVEMEAGVAA*
DelMOSpr2010_1000322417	F034542	N/A	MYPTTRADMKMWMVGIRPRDSFKFIDFDYAIQSVINYDETTYAVRLTSNFGAPISFFTGEVLSNRFNADGTDKKFGFNNYTVTAVGINGVPATPSYVPIFNTLFLSHARNNSWSVVDENRMTIPASGPPAVGEYLTTEMRTQCTCPDFLGREGFDLYQASIKRKYPYTGVFNMAPGFYDAGVDQSTRLVNAPDDPGFARTFGFLYTNEIYNIPSYTQPVYSDPNFFYYQPKWCKHIYAAMWDLQRKYGQQNMTAPWLPQPTDEPMNEYYREKFDRDLKKQSDFLRREKDLRWWQRYSPTKDDMPRHMTYPDMYNMMSKTLNFGDLSGPSTINKGFFEMFTIDEFDPFAPINFDDLETYDGGTYENGVLVEQPTNILDGGEYANGVLIPPVGFPSLVNGGTY*
DelMOSpr2010_100032245	F025981	N/A	MTSPEISDLFKVLQNIDTSLQMLANSKSGKVTTAFVSKKALALRMNVPGVKIDKLIHQGITSGGTSGLVEGRHYCKLDPSENNPSNYLYDSTKVLTDAWKNFSGYGNEQVS*