Scaffold DelMOSpr2010_c10002923

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10002923
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 9852
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (3.85%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041491	Metagenome	160	Y
F059454	Metagenome	134	Y
F068141	Metagenome	125	Y
F076604	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1000292311	F059454	N/A	MKSYLLKKLITGYKVNPRYSGFDLVALPYKYTNEKILVRHSDKKMTIDKDTPLLGEQMFPDKFGRDKTYTLYYYQWEPSKNQIKLDL*
DelMOSpr2010_1000292321	F076604	N/A	MSEVSTCCGCSFENSFITDCCTVEVYTDTDVCPGCNKHADTSGYICNECENWFEYPEELSEYNARMKENHYEEMADARRKYGE*
DelMOSpr2010_100029235	F068141	N/A	MSILGISFCAAIGYYIIVYKALGRRRLVKTQTFWDILFTLLLPLLFIGTFSGLATAVVAGVFFSVFTAMTPSVDEPNK*
DelMOSpr2010_100029239	F041491	N/A	METNTISXNVSXTINIGNFXAXKINYGQSITVDPTKPLEEQREELIKECYNTVKKQTALWTLKTIQHVDSQKNTTVYKAKSNG*