Scaffold DelMOSpr2010_c10002810

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10002810
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 10066
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (96.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052944	Metagenome	142	Y
F054436	Metagenome	140	N
F092883	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1000281011	F054436	AGGAG	MYYITTHKQGAGNMTIWRHVKKLSSFKPEEGVEYVVAKNKKAMKIEMGDTLPVYIGLNGKLKKCSSYALYLF*
DelMOSpr2010_1000281021	F052944	GGAGG	LKIIQGNFNKDKSKSLNEKIIDGITKLEDSSDEETLRYPFILIVDTGEDLKVVSDIEMEKFNLLLDLVKMTILSGDYE*
DelMOSpr2010_1000281024	F092883	AGGAG	MYRYTYEDTVYDVEKLSLEGVACFKLLADVQERIDNFANEVTIAQASAVALHQKMQEYLEDSAIVEGAKTEE*