Scaffold DelMOSpr2010_c10002609

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10002609
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 10454
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (15.79%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010083	Metagenome / Metatranscriptome	308	N
F010538	Metagenome / Metatranscriptome	302	Y
F018354	Metagenome / Metatranscriptome	235	Y
F050346	Metagenome / Metatranscriptome	145	Y
F081280	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1000260916	F018354	N/A	MRHETIAMEVSPLEFEGIRTIDFDAQVDDDEKMVFVTMSRYFIGDLHDECIKKTEKMFKGYRVKTNVRM*
DelMOSpr2010_1000260917	F081280	GAG	MIETTTIEVPVNPFHFDGMRSLGIPIKVDHKEQMIYVDFMSNQGTQIMENFLDEVRHKFSGYEIRVAKLDQ*
DelMOSpr2010_100026093	F010083	N/A	MYNFLLKIISWWYNENPYRDVMPLKMIYDVNTNKDCLFPSVEWKKVMEGWPLMKSGEIYSLCYYPYIRNDYYTLRRKKPECIENIRYEQEYTYRGSPYSMVTRDPMRRVQDVEESDGLKGPIMVQKVEAITENGEVKMWDTPRFLRYAGPRSDFHGCKDIQMKDLFEANEEVPDEWHVYMLGRKVVIRKDDLLTPDILARDKI*
DelMOSpr2010_100026095	F050346	N/A	MITTPEEVPKSLGNVYSYKQGYSSWKEFIEHEGEAGFKRFLKDLYTRDLKK*
DelMOSpr2010_100026097	F010538	N/A	MQNLLLIALAVFALLLFFKYREGFKWDRGFAGFRPEVSGVITEGNLEIEGNPVENVSVKALMIKKILDATTEMIFNTKGLRMFPIETIFVQVFNTAEKVAELKQKRPDVYDAYVKFLKERDAISSGTRGGDGYEQERQSRTALVNYLEQLKRNEDYATVPDNIPATYRARFLLLETDRFYGTEVDVIAIGDEKGITIQGITSQPLEDGSKIKAFQDVLRAGEWMPYNTIANASIPNKSALTLAENAIKDKWGEDFQTYEATATAPVGQFNPPVTPYLR*