Scaffold DelMOSpr2010_c10002446

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10002446
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 10817
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (68.97%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002221	Metagenome	581	Y
F010878	Metagenome / Metatranscriptome	298	Y
F024204	Metagenome	207	N
F038657	Metagenome / Metatranscriptome	165	N
F092098	Metagenome / Metatranscriptome	107	Y
F093807	Metagenome	106	N
F099546	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1000244610	F010878	AGGAGG	MKIKAWHIGIVWDDDTEETLSDIPNWVATRVDEFLNELEEEYDD*
DelMOSpr2010_1000244613	F099546	GAG	MADKKQIDITKLKRQIDKGKSLNEVSISLGKSKSTILKLANENGLKFDNKSHWANL*
DelMOSpr2010_1000244617	F002221	AGG	MKTYLDKNLEGKLKELRTYELETYEKWGSRKRIFKMVGVQFEIKFCRGEQMLRESLESDVVRKKIQMVDMMHRAFVALNIKCEESGYIMIQPRAKCFNFDKKTALICDTDEQKPLLVKIHKDEPDIMIFSIEELLRCIPKDFMEAKQILSKLDKSVNFKRIDHD*
DelMOSpr2010_1000244620	F038657	AGGAG	MDVLGGMSNTENKQQIYLGFKTRDQKFFANGETEVPIEYLQLDTDTFKSGWGRYTKAEGFQYKWDSKFGVVNPKPADEWRRAFSAWVMPSEAEHAYLWQSFSFAESSAFNNICGLFWADKANNVGKLPVVEYKGSKHIQVGAGNSSELSFGFVKWGDRGFNVPEWYIDPDAPADDDDGFVSPNEGLADKVAEMVAKTELSDDDIPF*
DelMOSpr2010_1000244623	F093807	N/A	MRQRKTVTQFSDIVELQRLKLNQERDEWYIHVNNGAGYTEVKQGNTLTITHHATGKKEVITDAN*
DelMOSpr2010_100024463	F092098	AGGTGG	MKITIDIDTSNSSFWHECEDSTQIFIHEEVERILKNIIPKIEITDHGMAKDINGNKVATFRVERDNEEY*
DelMOSpr2010_100024469	F024204	AGGAG	MSNYSYLEIVEEGITVCASCGGANINLNKGMHKQDKNKTLDHCFDCDFAEGVTTCMPNDLHFYQEAKETLNKLQEV*