Scaffold DelMOSpr2010_c10001862

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10001862
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 12577
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (31.25%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015725	Metagenome / Metatranscriptome	252	Y
F021972	Metagenome / Metatranscriptome	216	N
F026547	Metagenome / Metatranscriptome	197	Y
F037207	Metagenome / Metatranscriptome	168	Y
F049007	Metagenome / Metatranscriptome	147	N
F073488	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1000186215	F073488	AGTAG	MDFEEFHVRDVMKLLREIILPRLCDLEQEVQLLRKTTWPICQAMREHYCFKIDENANISRQLKALVDPEEYRRIVHMKEEFKHRYCDKFRNSL*
DelMOSpr2010_1000186216	F021972	N/A	YHLGRTRPQQTWSRPTEEELNPGYLFGHYLMVEPGEFRTWLDYQRWGENKELTDYQCSFFEYIKEMVDEIYPGADRTELGMALIYGEGTRDDVATILNLMPTTFVKE*
DelMOSpr2010_100018625	F037207	AGG	MSRQQINITGAPGVGVDARALEAQEERLIGFTKGTSDFIKKIQTTFLNPKVLFVVITFIFILTIETMWGSYFKTQDSKEFAKGSSGIIRSMTYFSWISGTILAFGACMYLAGPFLFGDVFGPKDQQVIVYVTGSLIFVYFINALVTGFGGAPTYTILGNFLAIK*
DelMOSpr2010_100018626	F026547	N/A	MIQASIASLVINLFILELIPFIYVKSFGCPDYLASEDRENMMRGTKWFIRLLALGFSLLVGFFIFGSSDMTKFYVYASLGGAVFVFLTFFGIPVEKFLFFNTDSLEEKCKNFKPKFKLSDN*
DelMOSpr2010_100018627	F015725	N/A	MSDNQPRKYRSIATDYFNYFTTRLRRTDAQYDAQLYLNAIPFLLMSMVMVIALHDLFSMFLLRSTKSTCKLMAWGGIGKIVFIRWMLLIPAIFFTMLFTSFFATLAVQTCDDGDRFCIIEFLNYKMIFVGIALGLFIMALFYAWKRRKEGSVEYLLIASLMDPNGDGRSKFLDECKNSKEFKDIMAKQNT*
DelMOSpr2010_100018629	F049007	N/A	MPACFPDMQPLVIDHNPFVYVKPKTSDNQFPASHVTPDTKFMCNTYTNRPTQLLARAPGGTAVRSSDSVTKVYRYSIQRP*