Scaffold DelMOSpr2010_c10001755

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10001755
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 12974
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (40.91%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001190	Metagenome / Metatranscriptome	753	Y
F002721	Metagenome / Metatranscriptome	534	Y
F003889	Metagenome	463	Y
F018836	Metagenome / Metatranscriptome	233	Y
F082558	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1000175513	F018836	N/A	MTSSVPAGQTDVDDWFDLDKYRQAAGVAYEFSKKKMETAGEQERETIGKGAGEQRASAAQQQEFSEKDEARDYKQAQRAYRY*
DelMOSpr2010_1000175514	F001190	N/A	VADNSLPAGQTGTEGDYFDITKFEELLNRLESSKGRQQRQKSLEGRRDIYAQGLATMMSNF*
DelMOSpr2010_1000175515	F001190	N/A	MADNSLPAGQTGTEGDYFDITKFEELLNRLEGSKGRQQRQKSLEGRRDIYAQGLASMMSNF*
DelMOSpr2010_1000175522	F002721	N/A	MSKDQRLDLGRYISNPFDKGGIKQRRLDFDDLFRSKPNSGQYPWNPSRFNQEDLLRKMQTRKRTLNPRLDFVPNTPFFDDNTKVTPEYDMFGLGRFNRPNDYDFFEGRAKTMQRPQEQPDFNPKWVEAYKLSPTVNPGKTAKNPMPRIKNPDPNGYLMAMAERRAENEVEDNPSVAQLLERKGTVVKEQEQATGETVSQVNATEEDIVQGEE*
DelMOSpr2010_100017555	F082558	N/A	MKTKKLVKNALKHPELYGPAELAFFRKWLDSKKRAKAAKINKDKKENS*
DelMOSpr2010_100017558	F003889	N/A	VGPEYLAVIATAIVSAFTGGTWVANKILDRQQERVQQAFDYIGSQKRRIDLLEDQVNRMPIEYVLKADFLREIKEMHDNFKQINNKLDKLMEKLLSK*