Scaffold DelMOSpr2010_c10001397

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10001397
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 14772
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021099	Metagenome	220	N
F027355	Metagenome / Metatranscriptome	195	Y
F047384	Metagenome	150	Y
F088821	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1000139712	F021099	N/A	MAFSDLTLTRNNIDALEELTFKGVNVTTGTTVLNLSEKDNLILGKAIKLLKTDILENLRQYINDSTYATETALLDAIHAADSEELLVDLLSYKFLELWFAQDATHKDSYSFSKAMKYYNMYNQYLTANLRRLSGLLAKPKTTPRVRFMSMY*
DelMOSpr2010_1000139715	F088821	N/A	MIDTSKLYSVSKDAVEDIVMKETRHPYYSVVLDRAKMMNSWFQAEYDEYTAISSTVFSDKSYIIDQSSIESDEEYRERLSRMKLFPLEQKFFSAQQRIYDENNVNRMYPENKDFWKWKETNFDDAGCSITEFYRDKVLFVKEVLGFGAVVTDLMMDGNGNPVTDTDGNVVPYNFVVRPHEIWNFQVKQGALTLLVTRQMYYDLDNIKKHKWTAYTPEYICVYIEENGKKQKTLEIPNPFGEVPATLLKGQTDANSSFIVGKPRRYSLKGMYLASSELFYDLKKGSELFGHPIPVLTDSIVRSLAGVADDDQYDSRTIKEGVGMAIIIPDDQQIPSNMLYQADMQGLQHLRDVIFGDLMSLIFSMAQVRDKSIVKSNVSGSAKRFDNVEEQGLLASTAMDMEMIEMQVLRRMAKVRDEDYEGYGVTYSKHYDLSSADEIFQDITEGMQYHAMSLPLIKKLTAEYMRKRSMPQEDIEEVMQHFNEYGMPKTATDLRNLVDILPQEELQRQAQVGIETQSEQ*
DelMOSpr2010_100013973	F047384	N/A	MSKLTNITIVTDAGGTETLTIQNYAETDELQFWGSTFDEALDGSLRSNFRDFRRNIGLTYNLCTTPDTYRSICNNIATDLTNGATFIYIGIDTNNLIRVVLDDGFASRVQYANQHGLFIPKINFTAFDLGLEITLNFEDYRFVNESVTVQRDYRFIYESVTTQLDYGNLT*
DelMOSpr2010_100013977	F027355	GAG	MGRITKVTGEFMGVRFEVKPTPIRFDKIINERRDMLMNWYKDNHPKLHKKLEEDKNSVDDYTMEDFEALNAWRLDEEFRAKYCKYTADHCLKLDKKITDATWKSDDLELGTLEEAWDFFTNRRQVPSNGVGVL*