Scaffold DelMOSpr2010_c10001179

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10001179
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 16146
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (42.11%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011666	Metagenome	288	Y
F020350	Metagenome / Metatranscriptome	224	N
F026260	Metagenome	198	Y
F033013	Metagenome / Metatranscriptome	178	Y
F035748	Metagenome	171	N
F038240	Metagenome / Metatranscriptome	166	Y
F059943	Metagenome	133	N
F067533	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1000117914	F011666	GAGG	MEWHPIQRTTESEFSEAATQKMLEGWLKQGDINGIYNAALLLNTCLHQQRMMTKWLAGEAARNLGKPELENDIMQDAILKSDQN*
DelMOSpr2010_1000117918	F059943	AGG	MSKANFPELVPEWNEPNRGPGISYCVAKNARMFDYELLLAGERSLRGCIRAVNKQDAIRILKNRHPECAIVEVGKGRKIVPPSKKA*
DelMOSpr2010_1000117921	F038240	N/A	MAIPAGNKYKVQVLLDPRAYEAMQREIIQRYDTEHRVTESSLANEIIKSHYAILESQHE*
DelMOSpr2010_1000117923	F033013	N/A	MAISLTSKATTTKTVMLQIDPDLYARIKAAAKQHNLPASAAMRQILEQGIQEIEASVA*
DelMOSpr2010_1000117925	F035748	N/A	MKLYQPEFAGMTVWSVADPKSSKGTYTATRGASPPPNASYGHPIGRYDSEGSYWTFCPNVGVEDPNSPQSSRWAKHPGADEERRKAIKEKAWGNLNSMGSYKETEF*
DelMOSpr2010_1000117926	F026260	GAG	MKRTFEITSAVKILRDGIAKGYWTLEDLDSPPPGTQMNFADYRRFCVAQGYVGKDPVYKNLLREAEKNQEDDFIL*
DelMOSpr2010_1000117929	F067533	AGG	MEKSHGLATLRRWMFITWANKMKTKDFYFHLSNTGVRDFVTAYSFVDAKARVWRQYPQDYERVVWEDPTDPVPDEPATSRLFF*
DelMOSpr2010_1000117931	F020350	GGA	MNGIGPVEFLVFSTNNRLRKPKHHVDSSQVRATLEELADLLDASLENQDLNALDVYSAINVIRLLARTPSDCFELHS*