Scaffold DelMOSpr2010_c10000803

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10000803
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 19665
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (77.78%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005315	Metagenome	405	Y
F007006	Metagenome / Metatranscriptome	360	Y
F020467	Metagenome / Metatranscriptome	224	Y
F028356	Metagenome / Metatranscriptome	192	Y
F037128	Metagenome	168	Y
F104763	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1000080314	F104763	GAG	MPTYKCVLFSDSIHQQYMIDQELAINLAIPQVVTEQATSDDARLALYSTTPTRMPALLILKDGAKMQTKHAKRSHEEIVTWIQSIVGV*
DelMOSpr2010_1000080316	F020467	AGGA	MHKRPTLQEAKLFLTQHSPDTIEEYVSMKETHGEFFAARYIVDIVDHFNHLQEKVVNG*
DelMOSpr2010_1000080318	F028356	GAGG	MFFKLTSRNSYRDLVRNARRISIAAISDSEKSLAFQELYNVLQQKLDETERSLNSQPAYAQRCDHWNQRDVRSIKRVTTERNPWLSFKREFVDALSQDSQIHAKRVSVALAWFYATPYRDDWIR*
DelMOSpr2010_1000080321	F007006	GAGG	MERALQEEIRKEINRIVDLMIQADSIRESIGELKKDIKNEYGLPVTTITKVATIIRKQNLEEEEQKWEEIKEWVDACS*
DelMOSpr2010_1000080322	F005315	N/A	MHIVTCGDSFTQGEGLKSVEQAYPSILSKKLNSQLTNLAQSGASEYLITAQVEQAVKLNPDLIVIGHTSEYRWEVWDFRNNCVQGFLVANWLKKHGKTSRNWIFSEQIIGNRRKDTREHKAAWHAAGMLYYSDHELVARLWSSAVAKQIILCQRANIPVIHHCCFSHLQEELEQLTDDWVGYHLDTEKYKNMAPDNSHAGALCHLELSKLIMNRHQPTL*
DelMOSpr2010_1000080328	F037128	GAG	MTRRIKKPLKDFFDNHSLTDAEKSFILGCIQAQNKFPQLTHRQWQIVCEIEERYKHVKISRSKENP*