Scaffold DelMOSpr2010_c10000586

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10000586
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 23101
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (17.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026406	Metagenome	198	N
F029769	Metagenome / Metatranscriptome	187	Y
F044200	Metagenome	155	Y
F087907	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1000058619	F029769	N/A	MAKNYTLNCSLSMSANSSTGYSQAQNGSYTLNITGVDQIATGRIDVAHDGDSTVMAAPGHGRMIYVRNLDDTNFVKIYDGASSAADLIGILEPGHFLMTIIRGTGTTVALADTASVTIEYAAIEIDANA*
DelMOSpr2010_1000058624	F087907	AGG	MEKSTEKYNIPIWLSNWVFKDSRNKTYELNNHIVKGHNKGSIFLDQNIVNKAVNKLIGSRSKKKLVPVNLTLLSQHGFGVDDNQKNNNVIK*
DelMOSpr2010_1000058632	F026406	N/A	MKNSVVFEGGIDKVSTLADGSLRVYLGTPELSNETMVNLFGLIKKPGYILISTNTINQDQIDAVEKATTNAEFSEKTPSQRMRGVMYKLWEKTQPKTLNGDTGEMEYVDFDLFYKRQMNKIIDHFKTKLD*
DelMOSpr2010_1000058637	F044200	N/A	MSTLPFNLNTTTTGRAKGEKVEYITPGAYECKITGLSTSDQLEDYKGSPFIQYAITSNGKVGRCRFWVVKQTDKPSTQEWKTKQIKDFLVNAGVKDFSDDSKAMNDAIGNSLMVTFISEEYIGVNRDNQEPVIRTSTKYRWSAKSGGKCTYNHDMNQTLTDEQMSEFSMKHSEWSKANSSMATTSDDEDMPF*