Scaffold DelMOSpr2010_c10000440

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10000440
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 27018
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (25.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010570	Metagenome / Metatranscriptome	302	Y
F010834	Metagenome / Metatranscriptome	298	Y
F019760	Metagenome / Metatranscriptome	228	Y
F031655	Metagenome / Metatranscriptome	182	Y
F061808	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1000044013	F010834	N/A	MKETLDLLLKLPKTISLNSLYAGKHWTYRKRIKDEYKKIVESELARFDHHLAESXTIVIRYNTRADVDNLVLVSKFTADTLVANGWIPDDSPKYYHKLTILFDGTVEKNYCEVEIKLKNAELSI*
DelMOSpr2010_1000044018	F031655	N/A	MKWLQNMNLAIDVAPLAGFLVGVNYWNSELDEDFQDPKYHSLQLCFGVLAIVATWSTEGQEQ*
DelMOSpr2010_100004402	F010570	N/A	MKTFRKYSFGSKGAATTKLNALGTETTPEGDVVPNHPHAIVHLGNLVEVAGTYNDEGEELTAPVMSSSYHIDVLWDGEPVEAWDSSMVWCAPLGLHSFGSSSAIAEWTEACKALHPEYFPEPSEDLLP*
DelMOSpr2010_1000044027	F061808	GGA	MKKFRVFVKDNFSAVFDTIEKARECRAAXKELNYDNIIIQVAEEDLP*
DelMOSpr2010_1000044048	F019760	N/A	MATGNGYGAIYGSTWWGSGDAFTNQIGWGAAMFYILDPAQFQNRALADGAEMEAFECVSRALRRFPQADLGRQLFDSYDTRVLTASGSTESRTCTINELNDLF*