Scaffold DelMOSpr2010_c10000345

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10000345
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 29925
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (89.58%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000256	Metagenome / Metatranscriptome	1448	Y
F030152	Metagenome	186	Y
F037707	Metagenome / Metatranscriptome	167	N
F062716	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1000034516	F062716	GGCGG	MMRKNIAGEMGARSSQPAKRRADLTVDPLERLNQKMAGRTQGGSVEGLSPEQKKKKRSIMTSYGMM*
DelMOSpr2010_1000034520	F037707	AGGA	MPSRTVNAQIMEKIVDRLAQGETLVDITADNDMPTYRAVTRAVASDDDMFELYRRGRILQAEYYSDKINKLAMEPLPEGGDVRHLNAEVNRRRLEIDTLKWTTARNQPFGVRDKKEDTAQQSQTVTISWAGGDVAVNAVDVVEHDEEVRH*
DelMOSpr2010_1000034523	F030152	AGGAG	MKITESAIQALATQSVKAQYNAETDKAIYLEGVIDAGGFDISLTDRPTQWDRCIEWLEEVAA*
DelMOSpr2010_1000034546	F000256	GGTGG	MADGVKGAGQMPFDIASNIHMQSRHREAIETHLAEQRVEKEHRHNHLHLEALQKQRLDLGESYDRFGRKTNADRPQGTKINIEV*