Scaffold DelMOSpr2010_c10000112

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10000112
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 51830
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (87.76%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012114	Metagenome	283	Y
F019646	Metagenome	228	Y
F040582	Metagenome	161	Y
F083943	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_1000011210	F019646	N/A	MSNNFEIWYSSDCCGASVHSDADLCPTCLEHCEVIEERVDYEESEAVHFQAGLDFYGAG*
DelMOSpr2010_100001122	F012114	GGAG	MSNNNCIMPKVRKNVWVVYDTHGNRIGEVGAMSEIEARQKVALHVMIPFRLSHIEE*
DelMOSpr2010_100001123	F019646	N/A	MNNNFEITYTSDCCGSYVHSDAEICPACLEHCEVIEDRIDYESSEAVHFESSLDFYGAG*
DelMOSpr2010_1000011236	F083943	AGGAG	MADLPILNAVDPEVIPAKTYDRVWIEEVVIKAPDPNGDISGEVKLHKYGMFDDVAEFSPEGGKWVRVENMLEKSESDVALQAAMGALIAYVTQLGVENNVIDPPTGS*
DelMOSpr2010_100001125	F040582	GGAGG	MGLIEMDLQSIVIGYMVGVALMWSLCETLYGDNNEKRAEKNSENTRPRYDRRYHMLYGDSPE*