Scaffold DelMOSpr2010_c10000058

Overview

Basic Information

• Taxon OID: 3300000116
• Scaffold ID: DelMOSpr2010_c10000058
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 69919
• Total Scaffold Genes: 125
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (24.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011219	Metagenome / Metatranscriptome	293	Y
F017994	Metagenome	237	Y
F033757	Metagenome / Metatranscriptome	176	Y
F037817	Metagenome	167	Y
F066780	Metagenome / Metatranscriptome	126	N
F080032	Metagenome	115	Y
F081205	Metagenome	114	Y
F081876	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSpr2010_10000058104	F011219	N/A	MYYRQHIQQKLENIEAKLKHIEFHNGRGNRQDVNAAKISCEELIEEIKAAIEREPMTPNEQNRQ*
DelMOSpr2010_1000005844	F033757	N/A	MVYVKQYKVSTYDEFLALTKNQKFTISQQIVETVLNNIDTKKKQLPIFEIEVESEGTTYTLSVQTEEFMETLNTNLVHFENEEAYEGCEKIIKAINYLKTKNG*
DelMOSpr2010_1000005846	F081205	GAGG	MSKNSNHQRYDALNDWDQFMQNEYPNYKERKKKSKVKPPTFLPPEEEDLQDYYGRK*
DelMOSpr2010_1000005857	F037817	N/A	MKMFSTVLIPEAKMGMEYVVTAEINSVNPEMDSRPGPYYFIQEVKKGTVKKIKKANFKQGKFYNCEDVVKA*
DelMOSpr2010_1000005864	F080032	N/A	MITEKKEKKVKIKYDFPSQLCCEVYVPNLEDWFRVTPREFRSWCGQRRMLHLEGSIKKNTGVKAEYKDYDGPTYLYDSNKKINPSNYTQNKVAFLHDEDPRKFTPRNGSERDYIHKIKAEAI*
DelMOSpr2010_1000005868	F017994	N/A	MEINEFIIHKTRWLNGWNEHMKLGDVNFKTYMRMKGLTEEEFAMLDDKSNEK*
DelMOSpr2010_1000005877	F081876	N/A	MIKFKKSEVFSFSECGSTYVIKALAYKLLETRAAQRTFDKTQFIKHPSKGDMVMIPTNVKFEIVK*
DelMOSpr2010_1000005891	F066780	N/A	MRKKWNADLVVEMVKYELEQMGLSHFETKHLLDGESGKEPHIMVTMDPNDRQFGYVIEALDRYFSIDMLVNRFKCRQNYYKLPQSKKDELFAQRIHPEAWEQDFLKSIA*