Scaffold DelMOSum2011_c10066471

Overview

Basic Information

• Taxon OID: 3300000115
• Scaffold ID: DelMOSum2011_c10066471
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1325
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003976	Metagenome / Metatranscriptome	459	Y
F015812	Metagenome / Metatranscriptome	252	Y
F051470	Metagenome	144	N
F061778	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2011_100664713	F015812	AGGAG	MNKTLYKRLEDICAREYVINKLTEDKFRTFVDFLYDDIRTWDNPTEVSDNDVMYRIEEHLSHMVARILTNTHTGTAHD*
DelMOSum2011_100664714	F061778	AGGAGG	MNKYGITVHYEEGFTVEVTATNVDEARKVAEDYVNEYCGVRESFSDTQDTGNTYLKTYHRDCWIVGEN*
DelMOSum2011_100664715	F003976	GGAGG	MSRTYNDYYFEKLDILDTLDKLDMNVRFLDRWVDEPEGLENARYVLEKNANRKFNWFDRNMVRELLEEEVR*
DelMOSum2011_100664716	F051470	GGAGG	MSNDNKWIHDYYDERWQHYYDELCKDIKDIEEVETIADRLAMEDVENLEMEG*