Scaffold DelMOSum2011_c10065884

Overview

Basic Information

• Taxon OID: 3300000115
• Scaffold ID: DelMOSum2011_c10065884
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1334
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F015346	Metagenome / Metatranscriptome	255	Y
F021674	Metagenome	218	Y
F022555	Metagenome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2011_100658841	F015346	N/A	SQEPLDEENVLMNHKLYKVGDLVAVASNRVLGIITRSNYWALDEYLGGEIEFVDVMFGGHESKQYPVRYLVEL*
DelMOSum2011_100658842	F021674	GGAG	MERETYNTRLKTNPEDIPVGSLMRCKKHCRNNITIQKNGEYAILARSIYRKGKAKYITHDALFPNGTRCIFMPVNWEVVSYVR*
DelMOSum2011_100658843	F006383	GGAGG	MYDKMWEVQQPGTLLRARSSHQYGKLALVLQEAYAGPTPSNGYPPRKYVKMQWLATGERFEEMLTNAHNCFDIVGSCDTLGPEEN*
DelMOSum2011_100658844	F022555	AGGAG	MAITPKFKPGQLVRYSQGLHDLVGLVKSTQFARRRGDPVFVLVQWCGKYRQQEEYIPQSELKLVEGS*