Scaffold DelMOSum2011_c10055860

Overview

Basic Information

• Taxon OID: 3300000115
• Scaffold ID: DelMOSum2011_c10055860
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1520
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001066	Metagenome / Metatranscriptome	788	Y
F043442	Metagenome	156	Y
F065107	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2011_100558601	F043442	AGG	MEALEECKVKNVVLSFKYSYANITKFRDRFDKLFVVAGTKTEPERYYELLKKHRGVYDHAIQYDVMYNMSDTLKHYKKEREMGIDWTIPVLQEHYLNHLSQLRPEPDTYVCLGEVHGREDTEDQIRKLPPNLKYHGLAKGRYTTKTRLFESLDTSGWVSAAMSKKCEVWNNNSTNFMFFGDKGKSMIPMLNHACEVHKEYLELINLNKQDLINGDYKALLKAPFALLYLPMCKQLNILDENFNL*
DelMOSum2011_100558602	F001066	N/A	MSGDIFKIKPLDEHASKVVVDGHKTVSPFNSAKHLKTANIPALCDQCVYRSIDSGGNGKCPKYEEGAMCAIRKDFIALINELDTRNPEHVKTMLDMLAKLSFENVLMALTESKFDGNIPDRNTKSEVNTLLKIISTIGEISSKIIVSEEQKFSKTGDIESIFRQIKAQKTGD*
DelMOSum2011_100558603	F065107	AGG	MPQPTKEIIAERANFMQSIVDCVHKPSKFSDIFLDHKLFEYNKKYVDCQDRFIVYRSG