Scaffold DelMOSum2011_c10052213

Overview

Basic Information

• Taxon OID: 3300000115
• Scaffold ID: DelMOSum2011_c10052213
• Source Dataset Name: Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1603
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → unclassified Chromatiaceae → Chromatiaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine → Marine Microbial Communities From Delaware Coast

Source Dataset Sampling Location

• Location Name: Microbial Observatory off the coast of Delaware, USA
• Coordinates
  • Lat. (^o): 38.848917
  • Long. (^o): -75.1076
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010277	Metagenome	306	Y
F024420	Metagenome	206	N
F031295	Metagenome	183	N
F050005	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
DelMOSum2011_100522133	F050005	AGGAGG	MYSKTNYPLYHEFKLMKFGNVLLNTNVDDILDQEIEETTVIINKLKDINQFLEV*
DelMOSum2011_100522134	F024420	GGAGG	MTIYEELRKIIDRNSCWQQEGRKFELLWNLLLSSDKRSFSEYFEEEHNIKLYDAMTFKEILTLCRDYNVGGRFK*
DelMOSum2011_100522135	F010277	GGAGG	MSRLKDKLLEVELFVGEKLQDLTNDQVIKEVRKHFGSQMFVDYAEELLHEFQQEVNLERLQSW*
DelMOSum2011_100522136	F031295	AGG	MVRAEEKLYNVISALTDEYNNYPHKRLKKSEVQDLVHDLEVVDAEFHDLKMPPITDDIQLDNRVCMFYVINQLKDMVTEKDDEQKLIQLTEFYNQLVFNLGINAL